Links

Chemical Hygiene Plan can be found in UCD Laboratory Safety Manual
Dept. Plant Sciences Injury and Illness Prevention Plan
Guidlines for Chemical Spill Control (Safety Net#13)
Hazardous Waste Management

Dept. Plant Sciences Safety Program   Safety Services (including EHS)   hazardous assessment Tool   Safety Data Sheet   BUA report
UC Safety

Department: Order System   Meeting Rooms   Room reservation request   Time Reporting System   Key requests

UC Davis   Campus Map   Library   OA funds   OA support

Academic Calendar   Grades   classroom lookup   Class Search Tool
MCB Instructor Tools   SmartSite   MyUCDavis
MyInfoVault
   Reprographics order   Campus Network and Service Status
Effort Reporting System   Status Hub

DNA sequencing facility   Primer order (VetMed)  VetMed Central Services UCD Buy (including Central Storehouse)

Botanical Conservatory Genome Center Proteomics Facility
EM lab at Pathology and Lab Medicine
MCB Microscopy and Imaging Facility

ASIS   Ledger Review  Academic Course Evaluation

Department of Plant Sciences    Plant Science Email

Postharvest technology RIC


Graduate Studies   GARD   Data Reports   FERPA
forms and informational materials for graduate students
Plant Biology Graduate Group
Biochemistry, Molecular, Cellular and Developmental Biology Graduate Group


Education
online ethics center for engineering and research  Plagiarism
safety of genetically engineered foods: approaches to assessing unintended health effects

Databases
Enzyme nomenclature   Genevestigator   Protein abundance database
NCBI nucleotide   Gene Index (from DFCI)   Chlamydonomas   Cyanobase
Barley Gene Expression Database   Phytozome   Merck Index

Calculators
Radiation decay   Student’s t-test

Vendors
Fisher   VWR   BioExpress   Agrisera   Anaspec
MCLAB:  sequencing service;  sample preparation;  primers
Beckman Rotor calculation

Journals
PubMed   ISI Web of Knowledge   Electronic Journals in UCDavis
Chronicle of higher education
Science   Nature   Cell   JCB   EMBO J   PNAS
Plant Cell   The Plant Journal   Plant Physiology   FEBS Lett
Annual Reviews   Trends in Biochemical Sciences   Trends in Cell Biology   Trends in Plant Science

Meetings/Professional Societies
Gordon Research Conference (GRC)
American Society of Plant Biologists (ASPB)
American Society for Cell Biology (ASCB)
American Society for Biochemistry and Molecular Biology (ASBMB)
International Society of Photosynthesis Research (ISPR)
International Society of Endocytobiology (ISE)

Basic molecular biology/database
Protein calculator   Peptide property cal   EMBOSS Transeq   Translate tool   RestrictionMapper   Primer 3   oligonucleotide calculator
EMBL-EMI Tools   BioTools@UMass   Reverse Complement
Pierce Protein Methods Library   Membrane protein topology database

Prediction Programs for Proteins
Bioinformatics Resource Poral: ExPaSy Protein Homology/analogY Recognition Engine Phyre2
Intracellular Targeting Signals: Target P
Secondary Structures:  Jpred
Transmembrane Structures:  TMHMM   PRED-TMBB   BOCTOPUS   BCL::JUfo9D
Proteolytic Fragmentation Patterns: PeptideCutter
Prediction of Protein Crystallizability: XtalPred-RF

Databases (Arabidopsis thaliana)
T-DNA Express   Plant Proteome DataBase (PPDB)
Gene expression profile during Seed development
Essential genes for seed development   TAIR
CressExpress (Coexpression Analysis)   AtGenExpress
Proteome covering about half of predicted proteins (as of October ’08: Pep2Pro)
aramemnon

Comparison
BLAST-NCBI   BLAST-2   ClustalOmega   MUSCLE  text   Blast guide   weblogo

Funding agencies
US-DOE  USDA-NIFA-AFRI   NSF

Others
weather in Davis   World Clock   currency converter
Beall’s List 2015    Login    google sheet
MSU-Center for Algal and Plant Pheno typing